Scientific software

Quantum Mechanics

Katramila
(xeon,rh7,xeon20)
Guinness
(xeon,oxeon)
Kalk2017
(xeon,rh7,xeon28)
[intlink id=”573″ type=”post”]Abinit[/intlink] ok ok
[intlink id=”1591″ type=”post”]ADF[/intlink] 2017.110 2017.110 2017.110
[intlink id=”1673″ type=”post”]BigDFT[/intlink] ok ok
[intlink id=”1951″ type=”post”]Casino 2.4[/intlink] ok
[intlink id=”1543″ type=”post”]Dirac 08[/intlink] ok
[intlink id=”4807″ type=”post”]Espresso[/intlink] ok ok
[intlink id=”1563″ type=”post”]Gamess Jan 2009 [/intlink] ok
[intlink id=”12″ type=”post”]Gaussian 03 & 09[/intlink] ok ok ok
[intlink id=”467″ type=”post”]Jaguar[/intlink] ok ok ok
[intlink id=”1889″ type=”post”]MIKA .81[/intlink] ok
[intlink id=”2077″ type=”post”]NBO 5[/intlink] ok
[intlink id=”100″ type=”post”]NWChem 6.3 [/intlink] ok ok
[intlink id=”4228″ type=”post”]Orca 3.03 [/intlink]  ok ok
[intlink id=”8846″ type=”post”]PSI4[/intlink] ok ok
[intlink id=”2111″ type=”post”]Qbox[/intlink] ok ok
[intlink id=”2085″ type=”post”]Qsite[/intlink]  ok ok ok
[intlink id=”7190″ type=”post”]Siesta 2.0.1[/intlink] ok
[intlink id=”7190″ type=”post”]Siesta 3.0[/intlink] ok
[intlink id=”39″ type=”post”]TB-LMTO 4.6 [/intlink] ok
[intlink id=”3889″ type=”post”]Terachem [/intlink] ok
[intlink id=”4705″ type=”post”]Turbomole 7.0 [/intlink]  ok ok
[intlink id=”98″ type=”post”]VASP[/intlink] ok ok ok
[intlink id=”1637″ type=”post”]Wien2K[/intlink] ok ok
[intlink id=”1655″ type=”post”]Yambo 3.2.2 [/intlink] ok ok

BioChemistry / Molecular Mechanics

Katramila
(xeon,rh7,xeon20)
Guinness
(xeon,oxeon)
Kalk2017
(xeon,rh7,xeon28)
[intlink id=”8263″ type=”post”]Amber[/intlink] ok ok
[intlink id=”4883″ type=”post”]DL_POLY [/intlink] ok ok
[intlink id=”1989″ type=”post”]Gromacs[/intlink] ok ok
[intlink id=”5739″ type=”post”] Gulp 4.0 [/intlink] ok
[intlink id=”5683″ type=”post”]LAMMPS [/intlink] ok
[intlink id=”2065″ type=”post”]Macromodel[/intlink] ok ok ok
[intlink id=”2011″ type=”post”]NAMD 2.6 [/intlink] ok
[intlink id=”5809″ type=”post”] Towhee 7.0.2  [/intlink] ok

Mathematics

Katramila
(xeon,rh7,xeon20)
Guinness
(xeon,oxeon)
Kalk2017
(xeon,rh7,xeon28)
[intlink id=”5224″ type=”post”] Coin-or [/intlink] ok ok
[intlink id=”5240″ type=”post”] CPLEX [/intlink] ok ok
[intlink id=”1363″ type=”post”]Grace 5.1.19 [/intlink] ok ok
[intlink id=”598″ type=”post”]Mathematica [/intlink]  8.0 ok ok
[intlink id=”4255″ type=”post”]Matlab[/intlink] ok ok
[intlink id=”1371″ type=”post”]Matplotlib[/intlink] ok
[intlink id=”612″ type=”post”]Octave 3.2.3 [/intlink] ok
[intlink id=”612″ type=”post”]Octave 3.2.4 [/intlink] ok
[intlink id=”8635″ type=”post”]R, RCommander and RStudio[/intlink] 3.3.3 3.3.2 2.7.0
[intlink id=”606″ type=”post”]Scilab 5.1.1 [/intlink] ok
[intlink id=”606″ type=”post”]Scilab 5.2.2 [/intlink] ok

Genetics

Katramila
(xeon,rh7,xeon20)
Guinness
(xeon,oxeon)
Kalk2017
(xeon,rh7,xeon28)
[intlink id=”6200″ type=”post”]ABySS[/intlink] ok
[intlink id=”1477″ type=”post”]BEAST[/intlink] ok ok
[intlink id=”6021″ type=”post”]BLAST [/intlink] ok
[intlink id=”1493″ type=”post”]Blast2Go [/intlink] ok
[intlink id=”6131″ type=”post”]Clean_reads[/intlink] ok
[intlink id=”5893″ type=”post”]CLUMPP[/intlink] ok
[intlink id=”7668″ type=”post”] Cufflinks [/intlink] ok
[intlink id=”5927″ type=”post”]Genepop[/intlink] ok
[intlink id=”8059″ type=”post”]IDBA-UD[/intlink] ok ok
[intlink id=”7981″ type=”post”]MetAMOS[/intlink] ok
[intlink id=”1495″ type=”post”]mpiBLAST [/intlink] ok
[intlink id=”7758″ type=”post”]QIIME[/intlink] ok
[intlink id=”8023″ type=”post”]SPAdes[/intlink] ok ok
[intlink id=”5875″ type=”post”]Structure [/intlink] ok
[intlink id=”7660″ type=”post”]TopHat [/intlink] ok
[intlink id=”7105″ type=”post”]Trinity[/intlink] ok
[intlink id=”7744″ type=”post”]USEARCH[/intlink] ok
[intlink id=”6043″ type=”post”]Velvet[/intlink] ok

Visualization

Katramila
(xeon,rh7,xeon20)
Guinness
(xeon,oxeon)
Kalk2017
(xeon,rh7,xeon28)
[intlink id=”5366″ type=”post”]Gaussview[/intlink] ok
[intlink id=”4012″ type=”post”] Maestro [/intlink] ok ok
[intlink id=”1275″ type=”post”] Molden[/intlink] ok ok ok
[intlink id=”1229″ type=”post”]NX client[/intlink] ok
[intlink id=”1353″ type=”post”] P4VASP [/intlink] ok
x2Go ok ok
[intlink id=”5544″ type=”post”] XCrysDen [/intlink] ok
[intlink id=”1261″ type=”post”] Xmakemol [/intlink]  ok ok
[intlink id=”3550″ type=”post”] VMD [/intlink] ok ok

Other Software

Katramila
(xeon,rh7,xeon20)
Guinness
(xeon,oxeon)
Kalk2017
(xeon,rh7,xeon28)
[intlink id=”1389″ type=”post”] GAP 4.4 [/intlink] ok
[intlink id=”5483″ type=”post”] Gretl [/intlink] ok
[intlink id=”1379″ type=”post”] HTK 3.4.1 [/intlink]
[intlink id=”1871″ type=”post”] NCL-NCAR [/intlink] ok
[intlink id=”1581″ type=”post”] OOMMF [/intlink]  ok ok
[intlink id=”6882″ type=”post”] PHENIX[/intlink] ok
[intlink id=”8520″ type=”post”] SCIPION[/intlink] ok
[intlink id=”576″ type=”post”] STAR-CCM+[/intlink] ok ok ok
[intlink id=”1875″ type=”post”] WRF 3.1 [/intlink] ok